matlab-formatted functions and gui’s Search Results


chromatof data  (LECO Corporation)
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phlip  (SourceForge net)
90
SourceForge net phlip
Overview of Image Analysis Programs for Biofilm Confocal Micrographs with a Focus on Tool Scope and Selection of Relevance to Experimental Researchers <xref ref-type= a " width="250" height="auto" />
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Average 90 stars, based on 1 article reviews
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2011b  (MathWorks Inc)
96
MathWorks Inc 2011b
Overview of Image Analysis Programs for Biofilm Confocal Micrographs with a Focus on Tool Scope and Selection of Relevance to Experimental Researchers <xref ref-type= a " width="250" height="auto" />
2011b, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 96/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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bit li cor pearl image sets  (LI-COR)
99
LI-COR bit li cor pearl image sets
Overview of Image Analysis Programs for Biofilm Confocal Micrographs with a Focus on Tool Scope and Selection of Relevance to Experimental Researchers <xref ref-type= a " width="250" height="auto" />
Bit Li Cor Pearl Image Sets, supplied by LI-COR, used in various techniques. Bioz Stars score: 99/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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raven toolbox annotated sequence kegg  (MathWorks Inc)
96
MathWorks Inc raven toolbox annotated sequence kegg
Overview of Image Analysis Programs for Biofilm Confocal Micrographs with a Focus on Tool Scope and Selection of Relevance to Experimental Researchers <xref ref-type= a " width="250" height="auto" />
Raven Toolbox Annotated Sequence Kegg, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 96/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Image Search Results


Overview of Image Analysis Programs for Biofilm Confocal Micrographs with a Focus on Tool Scope and Selection of Relevance to Experimental Researchers <xref ref-type= a " width="100%" height="100%">

Journal: ACS Omega

Article Title: Tools of the Trade: Image Analysis Programs for Confocal Laser-Scanning Microscopy Studies of Biofilms and Considerations for Their Use by Experimental Researchers

doi: 10.1021/acsomega.2c07255

Figure Lengend Snippet: Overview of Image Analysis Programs for Biofilm Confocal Micrographs with a Focus on Tool Scope and Selection of Relevance to Experimental Researchers a

Article Snippet: PHLIP , free, open-access, available at https://sourceforge.net/projects/phlip/ , Windows, Linux, macOS , MATLAB toolbox-based script , GUI , segmentation; biofilm volume, morphology, and surface characterization , allows batch processing; offers both manual and automated (Otsu’s Method) thresholding; multichannel analysis; biofilm spatial and temporal calculations: biovolume, substratum coverage, thickness, roughness and colocalization; offers a data conversion option (PHLIP-ML) to convert different image formats to input format; has direct connectivity to PHLIP-ML (file convertor) for Leica Systems , MATLAB-based and requires MATLAB licensing; requires preprocessing steps such as image inversion and x-section resolution.

Techniques: Selection, Fluorescence, Bacteria, Staining, Cytometry, Labeling, Cell Counting, Introduce, Filtration, Activity Assay, Software, Microscopy